Window average help

As default, a moving window average of 5 residues is used. Using this value, a threshold of zero E/kT units is appropiated to define a high energy region. When changing the window average value, the user should be careful about the interpretations and the threshold defined. We provide the flexibility to fix the values for the window average and threshold. This is intended to be used carefully.

The user could want to see the energy profile using a window average of 1, after some regions have been identified as suspucious ones. The value of 1 in the window average parameter means that no average is used, thus each residue can be examinated independently of its neighbors. With this analysis, the residues that are mainly responsible for the high energy regions obtained can be pointed out.


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